PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G029700.1
Common NameB456_011G029700, LOC105777073
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 170aa    MW: 18365.7 Da    PI: 10.8459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G029700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-20858256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Gorai.011G029700.1  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58
                        69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-13857IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-22866IPR016177DNA-binding domain
PROSITE profilePS5103222.721865IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-32866IPR001471AP2/ERF domain
CDDcd000181.94E-28864No hitNo description
SMARTSM003805.3E-37871IPR001471AP2/ERF domain
PRINTSPR003674.8E-11920IPR001471AP2/ERF domain
PRINTSPR003674.8E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA  60
KTNFPTPSSS SSPPPALSLD LNLASHNPHR WALASPHHHH RFAAVGDFLQ AGGIKDMNFG  120
PDPSSSTRPN VLSVSTSPPV TANGNTASFL GIVRRGLPID LNEPPPLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22872570ATERF1
3gcc_A7e-22872570ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0038070.0JN003807.1 Gossypium barbadense ethylene-responsive element-binding protein 4 (EREB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455584.11e-120PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID64e-49ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A0D2VHI81e-120A0A0D2VHI8_G
STRINGPOPTR_0004s04700.18e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-46ERF domain protein 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]